FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10834781
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG38250.019.9001667
TTGTGAG56650.019.7276736
CGGAGAT38500.019.3710429
TCGGAGA39300.019.0326128
CTTGTGA56300.018.8537145
GACTCTC57750.018.6925031
CCGCTAG38550.018.63300310
CGGTGGA18650.018.5196536
GAGTAAT53400.018.45698710
CGTGTGC38100.018.3615845
CACCGCT40000.018.342058
GGCAGCT27950.018.3000876
GGCATCC43450.018.2780326
CTATCGG34150.018.1985912
GCCGATG42700.018.1681881
GCTCGAC30850.018.0773536
GACGTTA44500.018.0514981
GGTGCCG18550.018.0265127
TTGCGTC40100.018.0015491
CCTATCG51600.017.9774591
Produced by FastQC (version 0.11.5)