FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12489347
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG44400.020.2388447
CGGAGAT44950.019.7709839
TTGTGAG65000.019.6348976
TCGGAGA45950.019.3646478
CGTGTGC44050.018.9074175
CTTGTGA67950.018.8147725
CCGCTAG41650.018.64462710
GGGTAAG40300.018.619153
GACTCTC68350.018.4968071
GAGTAAT62950.018.4515210
GCTCGAC30400.018.4216356
GGCATCC51400.018.3443246
TCGTCGA37800.018.220766
GCGATCC43750.018.1819614
GGAGTGC25600.018.136555
CCGGGTA36400.018.106761
ACCGCTA43050.018.0886739
CTCGAGG31050.018.0727351
CTGGACG19000.018.0103471
GTCGATT44600.018.0025758
Produced by FastQC (version 0.11.5)