FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8869301
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG30850.020.0377627
TTGTGAG50300.019.5950936
CGGAGAT30750.019.5664839
TCGGAGA31650.019.114358
GCTCGAC23550.019.0112536
CGTGTGC30550.018.9400795
CGGTGGA17250.018.9397666
GGGTAAG30400.018.8526083
CCGCTAG29400.018.55687710
CTTGTGA50700.018.4858265
CCGGGTA27800.018.401351
GCGATCC32100.018.3682174
CTCGAGG21950.018.3437481
GACTCTC47300.018.2811261
GGCATCC36900.018.184896
GACGAGC13800.018.1729859
ATCGGTA26650.018.1206844
GAGTAAT48200.018.11940810
TACCGGG30000.018.0787011
CTGGACG14200.017.9738521
Produced by FastQC (version 0.11.5)