FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9064743
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG31000.019.9408457
CGGAGAT30950.019.7246119
TTGTGAG49450.019.552886
TCGGAGA32200.018.9586968
CCGCTAG30150.018.49680710
CCGGGTA26800.018.4767841
CGTGTGC31200.018.4741655
GGGTAAG30150.018.461243
GAGTAAT45900.018.45245610
CTTGTGA51550.018.3935995
CTCGAGG23850.018.3629881
GACTCTC49350.018.2841721
CTATCGG29650.018.1789632
GGTGCCG14900.018.1600827
CGGTGGA15700.018.1463076
GCGATCC31500.018.0889974
GAATGCT45200.018.0333942
AGCGATC32100.017.9565933
GGCATCC35750.017.9382726
ATCGGTA27500.017.8401074
Produced by FastQC (version 0.11.5)