FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8854354
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG30550.019.875027
TTGTGAG46450.019.5128696
CGGAGAT31000.019.4446879
GCTCGAC21800.018.7700796
TCGGAGA32150.018.7491538
GAGTAAT44300.018.72189110
CTTGTGA48700.018.6339385
GACTCTC47250.018.6265141
GGCATCC36450.018.6194696
CGTGTGC30700.018.5597025
TCGTCGA26800.018.5516836
CTATCGG29150.018.490222
CGGGCAC26600.018.4430544
GCGATCC33350.018.4042454
GGTGCCG13950.018.2933567
AGCGATC34550.018.2744163
GAATGCT43050.018.218012
CCGGGTA25050.018.1378461
GGGTAAG28800.018.1036223
GGGATCG13250.018.0146549
Produced by FastQC (version 0.11.5)