FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11768210
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG39500.020.0219767
CGGAGAT39500.019.7716889
TTGTGAG64700.019.4999856
TCGGAGA40850.019.1721368
CTTGTGA64600.018.8150315
GCGATCC42600.018.694084
CGGTGGA21400.018.6581276
GCTCGAC32300.018.5255686
GACTCTC59700.018.4824261
GAGTAAT61300.018.4465510
CGTGTGC40150.018.3280285
GGCATCC50000.018.325266
AGCGATC45200.018.2514763
CACCGCT41450.018.1250298
TCGTCGA33650.018.1092246
GGGTAAG37600.018.0790563
GGTGCCG18350.018.042877
CTATCGG37700.018.0020792
CCGCTAG40450.017.94766410
CCGGGCA25700.017.9331283
Produced by FastQC (version 0.11.5)