FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11796890
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAGAT38900.019.7373079
CTCGGAG39850.019.6254527
TTGTGAG64900.019.4745146
GCTCGAC32850.018.986246
GAGTAAT59950.018.84365510
CCGCTAG39900.018.77405710
TCGGAGA41150.018.684688
GGGTAAG36950.018.5768663
CTTGTGA68050.018.5408745
CGTGTGC41400.018.492855
ACCGCTA41300.018.190849
TCGTCGA37800.018.1586726
GCGATCC41450.018.1523934
GACTCTC64250.018.1359841
GGCATCC46400.018.0883036
CACCGCT42600.018.0228828
CGGGCAC34600.017.9946174
GAATGCT58050.017.9831712
GCCGATG46400.017.9513111
GACGAGC16650.017.9034659
Produced by FastQC (version 0.11.5)