FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11714753
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG42050.019.9324077
CGGAGAT41800.019.7889829
TTGTGAG64800.019.4866716
TCGGAGA43600.018.9970748
GAGTAAT60950.018.80519310
CTTGTGA66250.018.7613185
CGTGTGC40350.018.7004185
GGGTAAG37850.018.5406763
CCGCTAG37850.018.39592410
GCGATCC41150.018.3635944
GCTCGAC33700.018.3432886
GCCGATG46100.018.2088091
GACTCTC65050.018.1979681
CGGGCAC35100.018.1757224
CCGGGTA34200.018.1752431
GGTGCCG19500.018.1631877
CACCGCT39800.018.1576868
GACAATC45000.018.0635323
GGCATCC48150.017.9097946
GTTGAAC41850.017.902331
Produced by FastQC (version 0.11.5)