FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8487370
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG30600.020.1299637
CGGAGAT30950.019.6535439
TTGTGAG44750.019.4690326
CTTGTGA46000.018.8443265
TCGGAGA32550.018.6874718
CCGCTAG28300.018.61767610
GACTCTC45900.018.5067181
CACCGCT29200.018.3828728
GGTGCCG13350.018.3738427
GAGTAAT42450.018.31968910
AGCCGGA11800.018.2705028
CGGTGGA16650.018.2350566
GCTCGAC24500.018.2293916
GGGTAAG25600.018.219573
TGCGTCT24800.018.1865162
CGTGTGC29600.018.1731175
AGGTCGC25500.018.1184646
CGGGCAC24600.018.0658534
TCGTCGA25000.018.040816
CTATCGG26550.017.982192
Produced by FastQC (version 0.11.5)