FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9810815
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG33550.019.9990737
CGGAGAT34000.019.6373259
TTGTGAG52000.019.3567476
TCGGAGA35050.019.0490468
GGTGCCG17450.018.7211957
CTATCGG32350.018.669212
GACTCTC51300.018.6620941
GCTCGAC26400.018.6259426
GGCATCC39150.018.51696
CGTGTGC34400.018.5155645
GAGTAAT48350.018.47277510
CTTGTGA53550.018.467885
GGGTAAG33250.018.2959423
CCGGGTA30350.018.165091
GCCGATG39700.018.1278291
GGAGTGC21700.018.097785
CCGCTAG33850.018.0671110
CGGTGGA17150.017.960096
GCGATCC33850.017.938964
GACGAGC15300.017.8292399
Produced by FastQC (version 0.11.5)