FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9899290
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG34900.020.7071487
CGGAGAT36450.019.5248229
TCGGAGA36800.019.3690158
TTGTGAG54450.019.0499636
CTGGACG14450.018.8874191
CGGTGGA17800.018.847786
GCTCGAC26150.018.760466
CTTGTGA54150.018.7289225
CGTGTGC33450.018.5794415
CCGCTAG33950.018.5326110
GGTGCCG16300.018.490277
CACCGCT35400.018.3017398
GAGTAAT51150.018.25754510
TCTCGGA46500.018.2381926
GACTCTC56600.018.1795851
GGGTAAG32000.018.1495743
CTCGAGG23900.018.0960331
GCGATCC34850.018.085574
AGGTCGC28950.018.0478466
AGCGATC36350.018.0353413
Produced by FastQC (version 0.11.5)