FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11329516
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG39950.020.2919587
CGGAGAT40300.019.679029
TCGGAGA41100.019.269218
TTGTGAG62100.019.2553526
GGCATCC43300.018.7999786
CTTGTGA62500.018.7977835
CGTGTGC40650.018.7808115
GCTCGAC27900.018.7284976
CCGGGTA33600.018.6022051
GAGTAAT57600.018.50438110
GACTCTC62100.018.4996831
GGGTAAG38300.018.2387143
CCGCTAG40550.018.22852910
AGGTCGC33250.018.1632776
GCCGATG46350.018.0671771
CTGGACG16900.018.0363431
ATCGGTA31850.017.9602034
GCTTCGA23900.017.904942
CGGGCAC31850.017.8911254
TCTCGGA52550.017.8771676
Produced by FastQC (version 0.11.5)