FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11392470
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAGAT39100.019.777029
CTCGGAG39950.019.7417037
TTGTGAG62200.019.6651236
CTTGTGA64000.019.077675
TCGGAGA40450.019.0625868
CGTGTGC40000.018.8920485
CGGTGGA20650.018.6436216
GCTCGAC28800.018.6384436
CCGCTAG39300.018.4728410
GAGTAAT59850.018.36046210
TCTCGGA50150.018.3584846
GACTCTC61500.018.3573861
GGGTAAG37650.018.3182873
GCGATCC40050.018.1818354
AGCGATC40800.018.1441733
GAATGCT53350.018.102662
CCGGGTA32950.018.1001631
AGGTCGC35250.018.0988586
GGCATCC44900.018.0062526
TTGCGTC42200.017.9136031
Produced by FastQC (version 0.11.5)