FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8931018
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAGAT32400.019.8608289
CTCGGAG32250.019.8163287
TTGTGAG49250.019.3636476
TCGGAGA33250.019.3199188
GACTCTC51100.018.927281
CCGCTAG30400.018.70707510
CTTGTGA48950.018.6508985
GAGTAAT46300.018.55491410
GGCATCC36000.018.5464386
CGTGTGC30850.018.4692345
GCGATCC32550.018.2142854
AGCGATC33700.018.2127783
CGATCCA33200.018.1889925
GCTCGAC21350.018.1865866
CACCGCT31650.018.1765738
CTCGAGG21850.018.1288951
ACCGCTA31500.018.088639
CGACCAG21550.018.0688424
AGGTCGC25850.018.041796
TTGCGTC30600.018.0150951
Produced by FastQC (version 0.11.5)