FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8923438
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG29900.020.0861847
CGGAGAT30200.019.7050919
TTGTGAG47250.019.6020226
TCGGAGA31300.019.0476178
GCTCGAC23550.018.9638146
CTTGTGA49400.018.7043635
CCGGGTA25850.018.51751
GCGATCC30950.018.4812284
GAGTAAT45950.018.33713210
AGCGATC31950.018.3159283
CGTGTGC31500.018.2284835
GACTCTC46950.018.140911
GGCATCC37250.018.1314566
CGGGCAC26400.018.124814
CACCGCT31050.018.102778
CCGCTAG30650.018.05201310
GGGTAAG29450.018.0032083
CGGTGGA17600.017.9999126
AGGAGTG14250.017.9857774
CGATCCA32350.017.885545
Produced by FastQC (version 0.11.5)