FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8721486
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG29250.020.0795887
CGGAGAT29200.019.8884269
TTGTGAG47450.019.408216
TCGGAGA30000.019.3210728
CGTGTGC33050.018.9756725
CTGGACG14900.018.8334481
CTTGTGA48200.018.8093575
GCTCGAC24100.018.5355426
GAGTAAT44950.018.47455810
GGCATCC35500.018.286056
TGCGTCT25450.018.2006992
TCGTCGA26750.018.1800356
CCGCTAG28200.018.136810
CGGTGGA16200.018.1339556
GACTCTC45850.018.121061
GGGTAAG28000.018.114933
AGGAGTG13200.018.0875424
CTCGAGG22550.018.0563981
CGCGATG15250.018.03129610
GGCAGCT22600.017.964466
Produced by FastQC (version 0.11.5)