FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11629891
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG41950.019.9800997
CGGAGAT41600.019.804729
TTGTGAG60750.019.5185286
CGTGTGC40500.019.3917875
TCGGAGA42900.019.3071378
GAGTAAT57050.018.77947810
CTTGTGA62400.018.7027455
GACTCTC63800.018.5907081
GGGTAAG37850.018.5409983
CCGGGTA33700.018.5119021
GCTCGAC30600.018.4404096
GACGAGC16000.018.2182279
GGCACGT20750.018.134511
CGGTGGA22200.018.134386
AGCGATC42300.018.1246973
CCGCTAG39050.018.0276510
GGTGCCG20100.018.0042257
GGCATCC47200.017.9907766
GGAGTGC22350.017.9634595
GCCGATG46250.017.9611071
Produced by FastQC (version 0.11.5)