FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47894424
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGGGG102050.011.66339838
AGCTTAG103150.011.51690545
GGCATAG103150.011.43025235
GTTGTCG22150.010.66538826
GGTCACT176600.010.0901777
CATAGGG118400.010.03380337
GTCACTC176850.010.0123028
TAGGCTA80800.09.82941310
GGGAGGT197700.09.6529793
TATCCTA92550.09.4341655
GCATAGG126850.09.40090436
TGGCATA127800.09.3136734
GAGCTTA128100.09.30888844
ATCCTAG107400.09.0709146
AGGGATC138200.08.7935882
ACTCTCC212750.08.76696511
TGTATCC107950.08.7350143
CGTGGCG102850.08.5994261
CTAGGCT91900.08.5932199
CGTAGGG66200.08.53098237
Produced by FastQC (version 0.11.5)