FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005200900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47015023
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG949350.20192481879674926No Hit
GAAAAAAATTCCAAAAGAGAACCACACACTACCATATCCAAACAACTTTTG749810.15948306565754525No Hit
GCCGGCTTCACGCTCAGGAGAAAACGTTACCTCTCTTCCTCGTGGTTTTCG650370.13833237941838292No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGA626710.13329994542382761No Hit
CCCCGCCTCAGTTACACATCCAAACTCTACATTTACAAAACGAATTCAGGG588470.1251663750116638No Hit
CTCAGTTCGACGAGGATGACGGTATAGAGTTTTCACTCATTTTGTTCAGCT588070.12508129582325206No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACATA533170.11340417721373867No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT511820.10886307553226125No Hit
CTTCTGTTAACAATTTGCAGGCAAATTAATGGCCTTTTCTAACATAGTTCA483450.10282883409415751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)