FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48957767
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGAGGT247300.013.1650153
ATAGGGG177800.013.02313938
GGCATAG180600.012.73376335
GGAGGTC246550.012.7031814
AGCTTAG183450.012.56827845
AGGGATC158450.011.9301722
GTTGTCG22100.011.5049226
GAGCTTA202250.011.41078644
TGGCATA206450.011.2916534
GTTCTAT195350.011.037821
CACCGAA310350.010.66495845
CATAGGG220850.010.56606937
GGTCACT294350.010.3895527
TCAGACG74650.010.3702272
GCACCGA347550.010.33941144
GCATAGG231350.010.12530136
GTCAGGA162150.010.1190991
GTCACTC308050.010.0152678
CAGGGAT209900.09.98317051
TGGGAGG257550.09.576542
Produced by FastQC (version 0.11.5)