FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005201049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44719529
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGAGGT221150.013.9223553
AGCTTAG161850.012.5506245
GGAGGTC247350.012.3474124
ATAGGGG168100.012.29750538
GGCATAG172250.011.83096435
GTCACTC266950.011.0728268
GGTCACT263650.011.0580257
GAGCTTA188400.010.92479544
ACTCTCC281350.010.428390511
TGGCATA198150.010.39759934
CATAGGG209700.09.87924137
TGGGAGG222700.09.8711452
GTTGTCG16400.09.60424326
GCATAGG222400.09.41623436
TCACTCT328900.09.3503619
TCTCCCC311650.09.34273813
GCTCTGT319150.09.33496922
CACTCTC323000.09.180963510
CGTGGCG87200.09.09271051
TCAGACG66750.09.0431852
Produced by FastQC (version 0.11.5)