FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005201151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42082859
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTGTCG21050.012.07831726
ATAGGGG101450.011.48835338
GGCATAG107600.010.601706535
AGCTTAG108650.010.58210945
TAGGCTA73400.010.26901510
TATCCTA83000.010.2201995
GGGAGGT182850.09.6967873
CATAGGG122050.09.64148637
ATCCTAG97300.09.5737846
ATATAGC40650.09.2991836
TGGCATA125750.09.16098234
GAGCTTA124650.09.15157244
GGTCACT179700.09.12774857
TGTATCC96300.09.0657143
CCTAGGC86950.09.0310768
GCATAGG131000.08.99994936
CTAGGCT86750.08.9222049
TGTCGTT29600.08.81751828
ACTCTCC192250.08.80099111
CGTAACG16500.08.72722342
Produced by FastQC (version 0.11.5)