FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005201159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47275779
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGGGG112750.011.70364438
GGCATAG122200.010.61755335
AGCTTAG124650.010.58166345
GTTGTCG19850.010.20643526
CATAGGG135750.09.84778137
TAGGCTA64100.09.81602610
GGGAGGT193900.09.7177293
GGTCACT190950.09.2844117
GCATAGG144150.09.19364936
GAGCTTA143100.09.17281844
GTCACTC196950.09.11582858
TGGCATA144100.09.03150534
CGTAACG13100.08.96277142
GGAGGTC208850.08.8805574
AAGCCGG165100.08.628798545
ACTCTCC220300.08.5894811
CTAGGCT76100.08.5036959
AGGGATC129800.08.4189922
CGTGGCG69400.08.3590861
CCTAGGC78600.08.3476768
Produced by FastQC (version 0.11.5)