FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005201236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47006155
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCACGGTGAGCTTGCTATAGAGGAAGAAGGAGCCGTCGGAGTCCAGCAC730610.15542858164000012No Hit
CCACGGTGAGCTTGCTATAGAGGAAGAAGGAGCCGTCGGAGTCCAGCACGG675550.14371522197465417No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTG573590.1220244455220811No Hit
CTTGTAGTTGTTCTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTC522230.11109821681862726No Hit
CTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTCGCTGGGATAGAA505740.10759016558576212No Hit
CTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTTGTGGGA479030.10190793099329226No Hit
CTCTTGTCCACGGTGAGCTTGCTATAGAGGAAGAAGGAGCCGTCGGAGTCC477410.1015632952748422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)