FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005201490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48842928
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1074090.21990696380855793No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTG631880.1293698035465851No Hit
GTCCACGGTGAGCTTGCTATAGAGGAAGAAGGAGCCGTCGGAGTCCAGCAC621160.1271750129312477No Hit
CCTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTATAGAGGAAGAAGG548780.11235608151910959No Hit
CCACGGTGAGCTTGCTATAGAGGAAGAAGGAGCCGTCGGAGTCCAGCACGG537060.10995655297323698No Hit
CTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTGGAGGG533050.10913555387179082No Hit
GCCGGCTTCACGCTCAGGAGAAAAACGCTACCTCTCTTCCTCGTGGTTTTC528140.10813029063286297No Hit
CTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTCGCTGGGATAGAA497380.10183255188960007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)