FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005201515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52856240
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGGGG150350.013.09533838
AGCTTAG151750.012.92776145
GGCATAG151850.012.59385235
GTTGTCG25350.011.62480526
GTCACTC222950.011.4962218
GGGAGGT238250.011.2688423
GGTCACT231350.011.0684217
GAGCTTA184100.010.74343244
CATAGGG181550.010.64590637
TGGCATA186900.010.47283934
GCATAGG188000.010.3040336
ACTCTCC252650.010.29621911
GGAGGTC270200.010.1274624
GACGCAA53900.09.97739444
TCACTCT271250.09.7228279
CACTCTC270850.09.4381910
GAGGTCA299850.09.2980555
ACACTCG88800.09.2751414
TAATCGG47500.09.0962014
ATATAGC54550.09.0748276
Produced by FastQC (version 0.11.5)