Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005201579 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48119469 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG | 48124 | 0.10000941614713163 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTTGTCG | 2860 | 0.0 | 13.768006 | 26 |
ACCCGGC | 8245 | 0.0 | 12.716422 | 5 |
GGGAGGT | 32460 | 0.0 | 12.435984 | 3 |
AGCTTAG | 19700 | 0.0 | 12.037377 | 45 |
GGCATAG | 20005 | 0.0 | 11.707892 | 35 |
GGAGGTC | 32420 | 0.0 | 11.694457 | 4 |
ATAGGGG | 20675 | 0.0 | 11.600926 | 38 |
GGTCACT | 32430 | 0.0 | 11.370619 | 7 |
AGGGATC | 16610 | 0.0 | 11.1531515 | 2 |
GTCACTC | 33265 | 0.0 | 11.1460705 | 8 |
GTTCTAT | 17500 | 0.0 | 11.010492 | 1 |
GAGCTTA | 21695 | 0.0 | 10.899327 | 44 |
GAGGTCA | 36170 | 0.0 | 10.7116 | 5 |
TGGCATA | 22225 | 0.0 | 10.680181 | 34 |
ACTCTCC | 35035 | 0.0 | 10.65329 | 11 |
AGGTCAC | 35670 | 0.0 | 10.634264 | 6 |
ATAGCTC | 9450 | 0.0 | 10.523652 | 39 |
CGGACAC | 10115 | 0.0 | 10.320463 | 13 |
TGTCGTT | 3940 | 0.0 | 10.165636 | 28 |
CCGGACA | 10825 | 0.0 | 10.100741 | 12 |