FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005201590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57532412
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC121150.021.0452214
TTCGACG40900.020.903796
GAACGAT123700.020.4992645
CAGACCG127800.020.3375263
CCGCGTT129550.019.7463937
CGCGTTC129750.019.6639338
AACGCTA150800.019.6045523
GACCGCG131050.019.4554215
ACCGCGT132250.019.3092276
ACGCTAC153900.019.26813124
CGCTACC162250.018.27652225
TTCGGCG107250.017.9157744
CGGTATA58750.017.88429520
AAAACGC169100.017.64260521
AATACGG144400.017.46631432
TCGGCGC113850.017.11468145
ATACGGA148100.017.02995133
CGTACGC114450.016.948815
CCGTACG114350.016.9439244
TACGGAG151550.016.68680434
Produced by FastQC (version 0.11.5)