FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005201691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47746721
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGAGGT254250.012.17258553
AGCTTAG177700.011.86885145
GTTGTCG23650.011.79702826
GGAGGTC262650.011.5185794
GGCATAG184350.011.09701535
GCGTCGT32800.011.04194811
GGTCACT260200.011.0137637
ATAGGGG189650.010.96351738
TCGTGTA34350.010.740869514
GTCACTC276650.010.5786298
TGGCATA204800.010.15358234
GAGCTTA209050.010.06741444
CGTGGCG141750.010.0473131
GTCGTGT39400.09.93504613
ACTCTCC296600.09.88250311
ACCCGGC71100.09.6175995
GAGGTCA321000.09.5861415
GTGGCGA149600.09.4415122
CATAGGG226450.09.30189937
TGGCGAC154350.09.2969273
Produced by FastQC (version 0.11.5)