Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005201702 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 50476592 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 51 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT | 72153 | 0.14294348556653746 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAACGAT | 14610 | 0.0 | 23.423107 | 45 |
AGACCGC | 15990 | 0.0 | 21.434265 | 4 |
CAGACCG | 16945 | 0.0 | 20.35902 | 3 |
AGAACGA | 18215 | 0.0 | 18.82437 | 44 |
TTCGGCG | 7755 | 0.0 | 17.378395 | 44 |
ATACGGA | 19720 | 0.0 | 17.319233 | 33 |
TACGGAG | 19750 | 0.0 | 17.213182 | 34 |
GCGTTCT | 20095 | 0.0 | 17.11921 | 9 |
CGTTACG | 1750 | 0.0 | 17.099264 | 21 |
CCCGTAT | 2500 | 0.0 | 16.75141 | 1 |
AATACGG | 20760 | 0.0 | 16.484116 | 32 |
GTCCGTT | 2965 | 0.0 | 16.402401 | 1 |
ACGTTCG | 2025 | 0.0 | 15.999327 | 6 |
CTCAGAC | 24650 | 0.0 | 15.728765 | 1 |
CTCCGAT | 4100 | 0.0 | 15.541072 | 1 |
CGTACGC | 8765 | 0.0 | 15.430458 | 5 |
GACCGCG | 22440 | 0.0 | 15.303403 | 5 |
CCGTACG | 8805 | 0.0 | 15.283716 | 4 |
CGGATAC | 6725 | 0.0 | 15.225635 | 3 |
ACGGAGA | 22430 | 0.0 | 15.206656 | 35 |