Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005201707 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 46223582 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATAGGGG | 12400 | 0.0 | 11.379213 | 38 |
AGCTTAG | 12850 | 0.0 | 11.140789 | 45 |
CGACCTA | 7800 | 0.0 | 10.699584 | 8 |
GGCATAG | 13100 | 0.0 | 10.408964 | 35 |
GGAGGTC | 17970 | 0.0 | 10.277452 | 4 |
GGGAGGT | 18235 | 0.0 | 10.26384 | 3 |
GATCGAC | 9530 | 0.0 | 10.055536 | 5 |
GAGCTTA | 14210 | 0.0 | 9.8844595 | 44 |
TGGCATA | 14410 | 0.0 | 9.603208 | 34 |
AACTCTA | 9815 | 0.0 | 9.586231 | 45 |
CATAGGG | 14540 | 0.0 | 9.518163 | 37 |
GGCGCTA | 5775 | 0.0 | 9.312296 | 32 |
GTTGTCG | 1980 | 0.0 | 9.204598 | 26 |
AGCGCTC | 5695 | 0.0 | 9.084795 | 9 |
GCATAGG | 15525 | 0.0 | 8.986114 | 36 |
ATCGACC | 10845 | 0.0 | 8.919435 | 6 |
CACCGAA | 26415 | 0.0 | 8.606622 | 45 |
AGATCGA | 17150 | 0.0 | 8.434072 | 4 |
CGTAACG | 1255 | 0.0 | 8.429795 | 42 |
TCGACCT | 11080 | 0.0 | 8.425898 | 7 |