FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005201773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55036747
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGGGG143200.012.11566638
AGCTTAG144400.012.00081645
GGCATAG153200.011.03089735
GGGAGGT230600.010.6344433
GTTGTCG23850.010.0936126
GGAGGTC249750.010.0172124
CATAGGG174500.09.92951637
GAGCTTA176550.09.90462944
TGGCATA178400.09.69931334
GCATAGG180050.09.59843636
TAATCGG52050.08.9474074
CACTCGA105150.08.9008455
ACTCTCC276600.08.76818711
ACACTCG112900.08.6884064
AATCGGT63700.08.5471855
ATAACGC41700.08.5258839
GGTCACT274800.08.4816117
GTAACGA47950.08.44617818
TAGGGGA271450.08.36410639
CGTGGCG84600.08.2710391
Produced by FastQC (version 0.11.5)