FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005201787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45549003
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGGGG92050.011.31715638
GGCATAG100650.010.52900335
AGCTTAG103200.010.0726345
CATAGGG113600.09.46737737
GGGAGGT177100.09.4653123
GCATAGG121700.08.94818336
GAGCTTA120050.08.84626544
TGGCATA121850.08.54939834
GGCGTAG57550.08.21020635
CGTAGGG56550.08.19624137
GGAGGTC198350.08.1903464
GCGTAGG57600.08.08589236
GGTCACT196550.07.80716477
GTCACTC206450.07.7815368
ACTCTCC202700.07.78116911
GTTGTCG18800.07.77921326
GTAACGA32850.07.534204518
TAATCGG39150.07.52899074
TAGGCTA57200.07.513078710
ATAACGC21350.07.48239439
Produced by FastQC (version 0.11.5)