FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005201788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48905514
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1340780.2741572248887927No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACATA1244740.2545193574695892No Hit
GAAAAAAATTCCAAAAGAGAACCACACACTACCATATCCAAACAACTTTTG683080.1396734118774419No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG545950.11163362887873951No Hit
CTTCTGTTAACAATTTGCAGGCAAATTAATGGCCTTTTCTAACATAGTTCA510810.10444834502710676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)