FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005201805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47659677
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTGTCG24350.012.66014526
GGGAGGT259600.012.4034363
GGAGGTC258000.012.0093624
GGTCACT260300.011.4430567
ATAGGGG194600.011.20330338
GGCATAG191750.011.05310435
AGCTTAG196450.011.00583145
GAGGTCA288900.010.8567415
GTCACTC275950.010.8105488
AGGGATC152300.010.7897512
ACTCTCC292550.010.3896911
GAGCTTA214150.010.033010544
TGGCATA217600.09.8227734
ACCCGGC62400.09.7356165
AGGTCAC320350.09.5999876
ATATAGC45650.09.5606586
CACTCTC309350.09.55629310
TCACTCT323900.09.4534929
CAGGGAT197200.09.3721421
TGTCGTT35300.09.3066928
Produced by FastQC (version 0.11.5)