FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005201877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005201877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44736162
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCTTAG148350.013.25971245
ATAGGGG165300.012.15639638
CGCTCGC37250.012.080049525
GGCATAG164500.012.0237135
GGGAGGT262300.011.8535543
TCGCTCG39050.011.4654824
GAGCTTA181550.010.98352744
GTCACTC276300.010.861718
GGTCACT279900.010.8103147
TGGCATA186950.010.67611434
GGAGGTC308000.010.2116354
TATCCTA70700.010.1190495
TCAGACG74300.09.931842
CATAGGG205000.09.75825537
TCACTCT320250.09.6942289
TACGCCA81950.09.417253523
TAGCGTA3603.212699E-79.37590137
GTTGTCG13300.09.30410626
TAGGCTA73300.09.29963310
TCTCCCC330000.09.25121913
Produced by FastQC (version 0.11.5)