Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005201925 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47245840 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATAGGGG | 11935 | 0.0 | 13.157697 | 38 |
GGCATAG | 13365 | 0.0 | 11.615024 | 35 |
GGGAGGT | 19270 | 0.0 | 11.061894 | 3 |
AGCTTAG | 14015 | 0.0 | 11.012867 | 45 |
GAGCTTA | 14835 | 0.0 | 10.570741 | 44 |
GTTGTCG | 2105 | 0.0 | 10.368022 | 26 |
CATAGGG | 15450 | 0.0 | 10.207953 | 37 |
GTCACTC | 20290 | 0.0 | 9.945875 | 8 |
GGAGGTC | 21200 | 0.0 | 9.944843 | 4 |
TGGCATA | 16255 | 0.0 | 9.757569 | 34 |
GCATAGG | 16220 | 0.0 | 9.695197 | 36 |
ACTCTCC | 21845 | 0.0 | 9.577436 | 11 |
TAATCGG | 3715 | 0.0 | 9.085036 | 4 |
GGTCACT | 22915 | 0.0 | 9.022308 | 7 |
CACTCTC | 23820 | 0.0 | 8.537366 | 10 |
GAGGTCA | 26445 | 0.0 | 8.482587 | 5 |
TCACTCT | 24940 | 0.0 | 8.388524 | 9 |
AGGGATC | 12900 | 0.0 | 8.308542 | 2 |
AATCGGT | 4765 | 0.0 | 8.21605 | 5 |
AGGTCAC | 27420 | 0.0 | 8.090154 | 6 |