FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005202030

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005202030
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47707898
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAACGAT306850.031.2572445
AGACCGC348850.027.8531974
AGAACGA351150.027.34606644
CAGACCG363700.026.8369263
ACCGCGT370900.026.201416
GACCGCG375400.025.8633335
CCGCGTT377750.025.720337
CGCGTTC380250.025.5512288
AAGAACG390800.024.5770243
ATACGGA394800.024.3241533
TACGGAG395800.024.26310234
AATACGG398050.024.16049432
GCGTTCT405100.024.0726919
TCAGACC410200.023.98742
CAATACG411450.023.37185331
CTCAGAC447950.023.1456321
ACGGAGA419700.022.86534935
TTCGGCG82650.022.72505644
CGGAGAG432700.022.14709936
CCCAATA440600.021.86793329
Produced by FastQC (version 0.11.5)