FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005202078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005202078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54818385
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1339330.24432131665316298No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT890780.16249657847453916No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACG584640.10665035097257973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)