FastQCFastQC Report
Fri 10 May 2024
EGAF00005202896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005202896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6683348
Total Bases334.1 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC90430.13530643623525215No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAAACACATCTCGTATGC68580.10261324114799947TruSeq Adapter, Index 5 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)