FastQCFastQC Report
Wed 8 May 2024
EGAF00005202908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005202908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2949406
Total Bases147.4 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT37880.12843264033503696Illumina Single End PCR Primer 1 (100% over 50bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA37210.12616099648539403No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCGTCATCTCGTATGC31120.10551277104610217TruSeq Adapter, Index 11 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)