Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005202933 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5451501 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTACAGCATCTCGTATGC | 6304 | 0.11563787661416554 | TruSeq Adapter, Index 7 (97% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTATG | 895 | 0.0 | 30.722475 | 43 |
CGTATGC | 890 | 0.0 | 30.15414 | 44 |
GATCGGA | 955 | 0.0 | 29.295393 | 1 |
CTCGTAT | 940 | 0.0 | 28.785006 | 42 |
TACGGCG | 615 | 0.0 | 28.256681 | 6 |
TCTCGTA | 990 | 0.0 | 27.333727 | 41 |
TGATACG | 555 | 0.0 | 26.951633 | 3 |
ATACGGC | 630 | 0.0 | 26.18725 | 5 |
ATCGGAA | 1095 | 0.0 | 25.713726 | 2 |
ATCTCGT | 1070 | 0.0 | 25.701775 | 40 |
ACACGTC | 1245 | 0.0 | 22.969057 | 13 |
ACGTCTG | 1300 | 0.0 | 21.828081 | 15 |
GTCACTA | 1350 | 0.0 | 20.696974 | 29 |
CACGTCT | 1400 | 0.0 | 20.26893 | 14 |
GATACGG | 805 | 0.0 | 20.221111 | 4 |
CGTCTGA | 1470 | 0.0 | 19.75267 | 16 |
ACGGCGA | 865 | 0.0 | 19.581402 | 7 |
CACACGT | 1510 | 0.0 | 19.08374 | 12 |
GCACACG | 1590 | 0.0 | 18.400248 | 11 |
TCACTAC | 1495 | 0.0 | 18.396263 | 30 |