Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005202946 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6278193 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT | 12641 | 0.20134774448635143 | Illumina Single End PCR Primer 1 (100% over 50bp) |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 9797 | 0.15604808581067833 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGATACG | 6600 | 0.0 | 41.66328 | 3 |
ATACGGC | 6915 | 0.0 | 41.165127 | 5 |
TACGGCG | 6940 | 0.0 | 40.98514 | 6 |
GATACGG | 7030 | 0.0 | 40.52302 | 4 |
ACGGCGA | 7375 | 0.0 | 39.104618 | 7 |
GCGACCA | 7470 | 0.0 | 38.518955 | 10 |
ACGACGC | 3250 | 0.0 | 38.516552 | 41 |
TACACGA | 3330 | 0.0 | 38.05581 | 38 |
GATCTAC | 7405 | 0.0 | 38.025875 | 21 |
ATGATAC | 7250 | 0.0 | 38.01898 | 2 |
CCACCGA | 7585 | 0.0 | 37.760937 | 14 |
ACCGAGA | 7600 | 0.0 | 37.57093 | 16 |
ACACGAC | 3300 | 0.0 | 37.532974 | 39 |
CGGCGAC | 7725 | 0.0 | 37.475273 | 8 |
CGACCAC | 7665 | 0.0 | 37.424225 | 11 |
CACGACG | 3345 | 0.0 | 37.35689 | 40 |
CGACGCT | 3135 | 0.0 | 37.260426 | 42 |
GGCGACC | 7815 | 0.0 | 36.931103 | 9 |
ACCACCG | 7730 | 0.0 | 36.910324 | 13 |
AGATCTA | 7685 | 0.0 | 36.754917 | 20 |