EGAF00005202954 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005202954
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1809940
Sequences flagged as poor quality	0
Sequence length	50
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC	4544	0.2510580461230759	No Hit
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT	3097	0.1711106445517531	Illumina Single End PCR Primer 1 (100% over 50bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2929	0.16182856890283656	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAAGAAATCTCGTATGC	2469	0.13641336176889843	TruSeq Adapter, Index 3 (97% over 37bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGATACG	1985	41.669876	3
TACGGCG	2045	41.52301	6
ATACGGC	2075	40.81666	5
GATACGG	2080	40.718548	4
ACGGCGA	2110	40.556644	7
CGACGCT	790	38.427917	42
CGGCGAC	2240	38.399326	8
ACACGAC	840	38.23776	39
CCACCGA	2230	38.176926	14
CACGACG	820	38.097225	40
ACCACCG	2220	38.051617	13
ATGATAC	2175	38.02975	2
GCGACCA	2240	38.006493	10
GATCTAC	2195	37.584057	21
ACCGAGA	2250	37.545296	16
TACACGC	770	37.427208	25
AGATCTA	2240	37.22186	20
ACGACGC	840	37.19015	41
TCGTATG	345	36.98314	43
TACACGA	865	36.879307	38