FastQCFastQC Report
Wed 8 May 2024
EGAF00005202956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005202956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1815556
Total Bases90.7 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC49310.2715972407350696No Hit
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT39070.21519578575378562Illumina Single End PCR Primer 1 (100% over 50bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA31410.17300485360958295No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAAGAAATCTCGTATGC26400.14541000112362273TruSeq Adapter, Index 3 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)