FastQCFastQC Report
Wed 1 May 2024
EGAF00005203627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005203627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57725985
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3570110.6184580479657471No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC3073410.5324136088799525No Hit
CTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC590960.10237330727227954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)