FastQCFastQC Report
Wed 1 May 2024
EGAF00005203631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005203631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55415994
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC2441760.44062369430745935No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG754560.1361628557993564No Hit
CCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGAC558500.10078317822829273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)