FastQCFastQC Report
Tue 7 May 2024
EGAF00005203689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005203689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34296066
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3466811.0108477164698715No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC1092890.31866337089507585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)