FastQCFastQC Report
Sat 4 May 2024
EGAF00005203925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005203925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88617251
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT1383300.15609827481558866No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT1119410.1263196485298331No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT960270.1083615198128861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)