EGAF00005204056 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005204056
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	45791974
Sequences flagged as poor quality	0
Sequence length	35-51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTC	108933	0.2378866654667475	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTG	97100	0.2120458925837091	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	83452	0.18224154302673215	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC	73446	0.1603905522832451	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	67569	0.1475564254993681	No Hit
CCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTCCA	64693	0.14127584890749634	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC	64342	0.14050933903832144	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGAT	58290	0.1272930492142575	No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC	54908	0.11990747548904532	No Hit
CTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTACCCATT	54617	0.11927199294793449	No Hit
CTCCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGG	54050	0.11803378469772892	No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAGGTCGGACGACCGATTTGCACG	52873	0.11546346527887179	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	51557	0.11258959921666623	No Hit
CGCCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGCCG	50450	0.11017214501388387	No Hit
CTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGG	50354	0.10996250128898134	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT	48879	0.10674141280740594	No Hit
CTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTT	47623	0.10399857407326445	No Hit
CACCCGTTTACCTCTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAA	47497	0.10372341668432988	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAACGAT	7630	45.911327	45
TCGGCGC	4185	33.75055	45
AGAACGA	8625	30.45639	44
TGCGCGT	3140	27.284658	45
GACCTTG	28025	25.860992	45
ACCGCGT	9405	25.6922	6
TCGATTA	10250	24.942081	3
GACCGCG	9715	24.941038	5
CCGCGTT	9850	24.663534	7
CGATTAG	10570	24.313498	4
CGCGTTC	9980	24.230654	8
AGACCGC	10000	24.229559	4
GTTCGAT	10625	24.022451	1
ATACGGA	10050	23.80859	33
AATACGG	10105	23.56758	32
CAGACCG	10375	23.461014	3
TACGGAG	10320	23.316393	34
TTGATGC	22950	23.234365	45
TTCGGCG	4540	23.154968	44
ACGGTAC	24815	23.101105	45